PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2624_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 212aa    MW: 23594.9 Da    PI: 4.84
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2624_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-191565155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  RrC2624_p4 15 TKFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 65
                5899******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.05E-321572No hitNo description
Gene3DG3DSA:3.30.730.102.9E-291673IPR001471AP2/ERF domain
PROSITE profilePS5103220.7191673IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-211674IPR016177DNA-binding domain
SMARTSM003802.3E-341679IPR001471AP2/ERF domain
PfamPF008472.8E-121665IPR001471AP2/ERF domain
PRINTSPR003672.3E-81728IPR001471AP2/ERF domain
PRINTSPR003672.3E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA  60
RSMRGTRART NFVYSDMPPS SSVTSIISPD DPPPPPPQPP AAATPCSNDH VDYMMMFNQY  120
SSTDSPMQQP DQVESSYMFG GSPSCYSNSS SELPPLPSDL SNSCYSQQPW SVEDYSSATY  180
FEGEYVHSPM FSTMPSVSDS LPQGFNHFGS YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-201472362ATERF1
2gcc_A1e-201472362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892120.0AC189212.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619809.11e-128PREDICTED: ethylene-responsive transcription factor LEP-like
RefseqXP_013677198.11e-128PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6446e-97LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLM4CPT31e-126M4CPT3_BRARP; Uncharacterized protein
STRINGBra006222.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-63ERF family protein